Articles 3 min read

The IRS Is Taking a Closer Look at Government Funded and Fiscally Sponsored Nonprofit Organizations

The U.S. Department of the Treasury announced on April 23, 2026, that the IRS is planning significant revisions to Form 990. While no immediate changes are in effect yet, this announcement provides direct insight into the IRS’s focus on providing greater transparency and stronger oversight, particularly for 501(c)(3) organizations receiving public funds or operating under fiscal sponsorship arrangements.

IRS and Treasury Focus

The Treasury and the IRS have been explicit about their intent. The expected updates to Form 990 are designed to:

Government Funding: More Scrutiny, Fewer Grey Areas

One of the biggest areas under review is how nonprofits report government grants and contracts.

The IRS has made clear that confusion around public funds is a problem. Misclassification of revenue or vague explanations may no longer be acceptable under increased scrutiny.

Future versions of Form 990 may require organizations to provide additional disclosures or information about:

For organizations relying on government dollars, this increases the workload around documentation, internal controls and narrative consistency across the return.

Fiscal Sponsorship Is Under the Microscope

Another area that is under scrutiny is fiscal sponsorship arrangements.

While these arrangements are perfectly legal, they have been flagged by the Treasury as areas where control over funds is unclear, operational responsibility is not well defined and oversight can be weak or undocumented.

The concern with these arrangements is that when something goes wrong, it’s often hard to tell who was actually in charge.

The newly revised Form 990 reporting is expected to require clear answers, making it much harder to mask responsibility behind layered relationships.
Organizations acting as fiscal sponsors, or operating under one, should expect more detailed disclosures and less room for lack of clarity.

What Happens Next

The IRS will release proposed regulations, followed by a public comment period. Final rules will take time and will consider administrative burden, especially for smaller organizations. There are no immediate filing changes yet.

The Bottom Line

If your organization:

Now is a good time to review these items, as organizations are far more likely to encounter problems under new reporting requirements if they haven’t reviewed their structures, controls and disclosures in advance.

How We Can Help

Withum’s Not-for-Profit and Education Services Team works closely with nonprofit organizations to navigate exactly these kinds of changes, translating regulatory signals into practical, defensible compliance strategies. Whether that means reviewing current Form 990 disclosures, assessing fiscal sponsorship arrangements or helping boards understand their responsibilities, proactive work now can prevent painful issues later.

Stay connected as we continue to monitor and provide updates on this emerging issue.

Withum plus signs.

Have Questions or Need Guidance?

For more information on this topic, please contact a member of our team.

Contact Us

Related Insights

Read more
Exterior of United States Department of Treasury
Private Schools and Tax-Exempt Status: Understanding the IRS’s Proposed Changes to Racial Nondiscrimination Requirements

Private schools have long operated under federal tax-exemption requirements that prohibit racial discrimination. On September 3, 2026, the IRS and Treasury Department released proposed regulations that would change how those longstanding requirements apply to schools recognized as tax-exempt under Section 501(c)(3). The proposal would affect private elementary schools, secondary schools, colleges, universities and other educational…

Read more
Withum's Employee Benefit Plan Services team works with not-for-profit sponsors where payroll spans multiple employee groups and pay types, aligning the plan document, the payroll codes, and the contribution calculations strengthens compliance and removes surprises from the audit. Reach out to your Withum advisor or contact us directly to discuss your plan.
Definition of Compensation: A Common Risk for Not-for-Profit Employee Benefit Plan Sponsors

For many plan sponsors, the definition of compensation seems straightforward. If everyone is paid a salary, determining compensation can be simple. However, in practice, compensation is one of the most critical and complex elements of plan administration. It is the foundation for participant deferrals, employer matching contributions, nonelective and profit-sharing contributions, forfeiture allocations and a…

Read more
With effective internal controls, your organization can reduce the risk of missed or late FFATA filings, avoid preventable audit findings and support compliance with federal reporting requirements.
Understanding FFATA Reporting Requirements for Federal Subawards

If your organization receives federal funds and issues subawards, it may be subject to additional reporting requirements. The Federal Funding Accountability and Transparency Act (FFATA) may be something you’ve seen in your contracts or discussed with your contact at the agency funding your contract, but in practice, you may have questions about what impact it…